Biography matlab example scripts

There are two ways of using MATLAB on our clusters:

1) Running MATLAB directly, but that requires a license. You may either

• run MATLAB on Béluga, Cedar or Narval, all of which have a license available for any student, professor or academic researcher;
• use an external license, i.e., one owned by your institution, faculty, department, or lab. See Using an external license below.

2) Compiling your MATLAB code by using the MATLAB Compiler and by running the generated executable file on any cluster. You can use this executable without license considerations.

More details about these approaches are provided below.

We are a hosting provider for MATLAB. This means that we have MATLAB installed on our clusters and can allow you to access an external license to run computations on our infrastructure. Arrangements have already been made with several Canadian institutions to make this automatic. To see if you already have access to a license, carr

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sbesson/writePyramidOMETIFF.m

writer = loci.formats.out.PyramidOMETiffWriter();I0 = imread('rice.png');I = cell(3,1);I{1} = imresize(I0, 8);I{2} = imresize(I0, 4);I{3} = imresize(I0, 2);I{4} = I0;metadata = createMinimalOMEXMLMetadata(I{1});toInt = @(x) javaObject('ome.xml.model.primitives.PositiveInteger', ... javaObject('java.lang.Integer', x));metadata.setResolutionSizeX(toInt(1024), 0, 1);metadata.setResolutionSizeX(toInt(512), 0, 2);metadata.setResolutionSizeX(toInt(256), 0, 3);metadata.setResolutionSizeY(toInt(1024), 0, 1);metadata.setResolutionSizeY(toInt(512), 0, 2);metadata.setResolutionSizeY(toInt(256), 0, 3);writer.setWriteSequentially(true);writer.setMetadataRetrieve(metadata);writer.setCompression('zlib');writer.setBigTiff(true);writer.setTileSizeX(256);writer.setTileSizeY(256);writer.setId('test.ome.tiff');% rädda pl

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MATLAB tutorial for ImageJ2

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Prior to MATLAB R2017b, MATLAB ships with Java 7, but ImageJ2 requires Java 8. You will need to change your MATLAB installation to use Java 8, by following the instructions for your platform: Windows, macOS or Linux.

If you run MATLAB R2017b and later, you don’t need to do this, as it ships and uses Java 8 already.

ImageJ-MATLAB is an extension which:

• Translates data between ImageJ2 images and MATLAB matrices.
• Enables execution of MATLAB scripts from inside ImageJ2’s Script Editor.
• Lets you launch ImageJ2 and interact with it from inside MATLAB.
• Allows developers to write additional plugins which extend these capabilities in new directions.

Prerequisites

• Add the ImageJ-MATLAB update site. See Following an update site for more detail.
  1. You go to Help › Update…
  2. Once checki